PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2573410.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 225aa    MW: 25604.4 Da    PI: 9.3508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2573410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d ++ +G g+W++I++  g+ R++k+c++rw++yl
  Lj2g3v2573410.1 13 KGAWSKQEDQKLIDHIRVHGEGSWRSIPKAAGLYRCGKSCRLRWLNYL 60
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567110247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Lj2g3v2573410.1  67 GIFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      66779****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23462IPR009057Homeodomain-like
PROSITE profilePS5129418.18860IPR017930Myb domain
SuperFamilySSF466891.09E-2810107IPR009057Homeodomain-like
SMARTSM007173.1E-141262IPR001005SANT/Myb domain
PfamPF002498.2E-161360IPR001005SANT/Myb domain
CDDcd001675.84E-111560No hitNo description
PROSITE profilePS5129425.05961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2563116IPR009057Homeodomain-like
SMARTSM007174.0E-1465113IPR001005SANT/Myb domain
PfamPF002498.7E-1469110IPR001005SANT/Myb domain
CDDcd001673.24E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRKPCCDKEN INKGAWSKQE DQKLIDHIRV HGEGSWRSIP KAAGLYRCGK SCRLRWLNYL  60
RPDIKRGIFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLIKMGI  120
DPNNHKLHQS LHRSHVHPLS VADASSSESM NKEQKIPCFK SCGTSIDQIS RNSCLEEEKA  180
IISSSPLNLD LTIALPSPNR LPIVEDKLTP NSKSKTLDID IDLNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2573410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904651e-128BT090465.1 Soybean clone JCVI-FLGm-4F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331289.11e-123myb-related protein 308-like
SwissprotP813937e-71MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A371FP051e-119A0A371FP05_MUCPR; Transcription repressor MYB4
STRINGGLYMA02G41440.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.18e-73high response to osmotic stress 10
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]