PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2365800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 371aa MW: 41583.2 Da PI: 8.4486 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.9 | 1e-33 | 53 | 110 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Lj2g3v2365800.1 53 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 110 8****************************************.***************85 PP | |||||||
2 | WRKY | 107.5 | 6.5e-34 | 224 | 282 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ Lj2g3v2365800.1 224 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 282 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-29 | 43 | 111 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-26 | 51 | 111 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 52 | 110 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-26 | 53 | 109 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.778 | 53 | 111 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-38 | 209 | 284 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-30 | 216 | 284 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.147 | 219 | 284 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-39 | 224 | 283 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 225 | 282 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010508 | Biological Process | positive regulation of autophagy | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MMMKTENSSS MQSFSPEIAS VQTNHNNGFQ SDYNNYQPQQ QQLQPQTLNR RSDDGYNWRK 60 YGQKQVKGSE NPRSYYKCTY PNCPTKKKVE RSLDGQITEI VYKGTHNHPK PQATRRNSSS 120 SSSLPIPHSN HISNDIQDQS YATHGSGQMD SVATPENSSI SIGDDDFEQS SQKCRSGGDE 180 LDEDEPDSKR WKVEGENEGI SAPGSRTVRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG 240 NPNPRSYYKC THPGCPVRKH VERASHDLRA VITTYEGKHN HDVPAARGSG NHSVTRPLPN 300 NTANAIRPSS VTHQHHHNTN NNSLQSLRPQ QAPDQVQSSP FTLEMLQQNQ GGFGFSSGFG 360 NSMGSYNMNN Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-38 | 53 | 285 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-38 | 53 | 285 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7220 | 0.0 | cell culture| floral bud| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00299 | DAP | Transfer from AT2G38470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2365800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004529 | 0.0 | AP004529.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT01K12, TM0058a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027939950.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Swissprot | Q6IEQ7 | 1e-129 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A4D6MHW1 | 0.0 | A0A4D6MHW1_VIGUN; WRKY transcription factor 33 | ||||
STRING | GLYMA14G38010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-108 | WRKY DNA-binding protein 33 |
Publications ? help Back to Top | |||
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