PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2276480.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 690aa    MW: 75691.7 Da    PI: 5.9044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2276480.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-08264284526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C++Gd C +aHg
  Lj2g3v2276480.2 264 PCPEFRK-GSCSRGDACEYAHG 284
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1640163IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.78E-1550142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.80260165IPR020683Ankyrin repeat-containing domain
SMARTSM002481.36090IPR002110Ankyrin repeat
CDDcd002041.30E-1362143No hitNo description
PfamPF127969.5E-765144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.42295130IPR002110Ankyrin repeat
SMARTSM002482.7E-495127IPR002110Ankyrin repeat
SMARTSM003563.1E-5259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901259286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4264286IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-6264284IPR000571Zinc finger, CCCH-type
SMARTSM0035631294317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MENEYGKQEE LHHKISALLE FSAADDLIGF KDAVEKEDHD VDEAGLWYGR RVGSNKLGYE  60
ERTPLMVAAM FGSLGVSIYI LGTGRVDVNR ASRSDGATAL HCAVAGGSAA SPEVVKLLLD  120
ASADVHAVDA NGNRPLDLIA SVNKSIFNPR KRLLQALLEG TGDADQAWLM FPEALDQIEE  180
QQRQDVSPPR VSRDGAEKKD YPADLSLPDI KNGIYGTDEF RMYVFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GSCSRGDACE YAHGIFECWL HPAQYRTRLC  300
KEERTCTRRV CFFAHKLEEL RPLYVSTGSA IPSPRSYSAN NSALEMGSVS PIAFGSPSSM  360
MPPVSTPPLS PSGASSPVAG GAMWQNVSVP ALQLPKSRLN TAFAARDIDF DNEFLRLEIN  420
RRRQQLMMDE VSGLSSPSNW KNSMPSGQSF SVSLNDHTGE LNRLSGVNPA NFEDMYGSLD  480
RSVLAQLHGL SLDVAGSQLQ SPSGMHQMRP NVNQQPRSYS SSLSTSSVIG SPPFNPSGEA  540
AAAMAFNPRS AAFSKRSQSF IERSAVNRHS ELSSAAPPFS VWGSPDRKQD WGMHGEELNK  600
LRKSSSFGFR SSSTPLAMAA TTAAPADVNE PDVSWVQSLV KDGAPSESGR FSFESSEDLQ  660
KQLQFYINSG ADVIPAWLEQ LYMEQEQMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.126430.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2276480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331570.10.0zinc finger CCCH domain-containing protein 66-like isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A371H8H60.0A0A371H8H6_MUCPR; Zinc finger CCCH domain-containing protein 66 (Fragment)
STRINGGLYMA02G39210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein