PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2089740.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 474aa    MW: 53428.3 Da    PI: 5.96
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2089740.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.41.7e-139494711374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++++++l +al++++     +see+ ++klf+e++P+lk++
  Lj2g3v2089740.1  49 LIHLLLTCANHVAAGSLENANITLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIV--MVSEEILVQKLFFELFPFLKVA 140
                      689*************************************************************988886..69******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI ea+ege++vHiiD+++ +++QW+aLlq L++Rpeg+p+lRiTgv++    +ke l +++++L++ Ae+l++pf+fn+ v ++le+
  Lj2g3v2089740.1 141 YILTNQAIIEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGTPHLRITGVHQ----QKEILDQMAHKLTEEAEKLDIPFQFNP-VLSKLEN 229
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll..........................................................desvsleser 224
                      l++++Lrvk+gEala+++++qlh+ll                                                          ++++s++   
  Lj2g3v2089740.1 230 LDFDKLRVKTGEALAISSIMQLHSLLalddesgrrkspllskhsngihlqkvllmnqntlgdflkkdmvnsyspstdsassspvSSTTSMNA-- 321
                      ******************************************************************************99876555555555.. PP

             GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                      +++L+++++lsPkv+vv+eq+++hn+++++er+leal+ y+alfd+le++++r+s erikvE++l+g+ei+n++acegaer+erhe+l kW +r
  Lj2g3v2089740.1 322 ESFLNALWGLSPKVLVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERIKVEKMLFGEEIKNIIACEGAERKERHEKLDKWLQR 415
                      99******************************************************************************************** PP

             GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      l+ +GF++ pls++ + qa++ l+ ++ +gyr+ ee+gs+v++W+dr+L+s++aWr
  Lj2g3v2089740.1 416 LDVSGFSNTPLSYYGMLQARRFLQSYGCEGYRMREENGSVVMCWQDRSLFSTTAWR 471
                      *******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.99423451IPR005202Transcription factor GRAS
PfamPF035146.0E-13749471IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MESMLQEEGS SSVTSSPLQF FSMMSLSPSI GSPYPWLREL KSEERGLYLI HLLLTCANHV  60
AAGSLENANI TLEQISQLAS PDGDTMQRIA AYFTEALADR ILKTWPGLHR ALNSTRIVMV  120
SEEILVQKLF FELFPFLKVA YILTNQAIIE AMEGEKMVHI IDLNAAEPAQ WIALLQVLSA  180
RPEGTPHLRI TGVHQQKEIL DQMAHKLTEE AEKLDIPFQF NPVLSKLENL DFDKLRVKTG  240
EALAISSIMQ LHSLLALDDE SGRRKSPLLS KHSNGIHLQK VLLMNQNTLG DFLKKDMVNS  300
YSPSTDSASS SPVSSTTSMN AESFLNALWG LSPKVLVVTE QDSNHNGSTL MERLLEALYS  360
YAALFDCLES TVSRTSLERI KVEKMLFGEE IKNIIACEGA ERKERHEKLD KWLQRLDVSG  420
FSNTPLSYYG MLQARRFLQS YGCEGYRMRE ENGSVVMCWQ DRSLFSTTAW RPRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-41324731380Protein SCARECROW
5b3h_D6e-41324731380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2089740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044850.0AP004485.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT08D14, TM0018, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361537.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A371HMH80.0A0A371HMH8_MUCPR; Scarecrow-like protein 3 (Fragment)
STRINGXP_004517294.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]