PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2088190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 330aa    MW: 36680.9 Da    PI: 9.1804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2088190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19130180256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Lj2g3v2088190.1 130 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 180
                      59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.49E-17129189No hitNo description
Gene3DG3DSA:3.30.730.106.3E-31130188IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22130187IPR016177DNA-binding domain
PROSITE profilePS5103223.301130187IPR001471AP2/ERF domain
SMARTSM003801.1E-36130193IPR001471AP2/ERF domain
PRINTSPR003674.3E-10131142IPR001471AP2/ERF domain
PfamPF008473.3E-13131180IPR001471AP2/ERF domain
PRINTSPR003674.3E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEGKRGNFNN TQHELRDSAN IGSSLSNLIL SSSSTNTLDS IFSDCPTTNN TASAATTNSV  60
MDYFEPFGVS SFEPLGSSVY LRQRDILQKF YQESRLNGSP VPTSFANPSL NAAPYTSSFT  120
SLLNPAKKKL YRGVRQRHWG KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE  180
YARLNFPNLK DPSKLGFGDS TRLNALKSSV DAKIQAICQK VKREKAKKNA AKKLNDTKRE  240
KQREEESQKK VDSASSSSSS LPPLSPSNFY DSWVNELFSP SVSEDGIWKG ENSPSSVSTA  300
MVTEETEFGG CSLERLPSFD PELIWEVLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20126187163ATERF1
3gcc_A6e-20126187163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.201100.0pod
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2088190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103170.0AP010317.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT47B15, TM0635, complete sequence.
GenBankKC7879740.0KC787974.1 Lotus corniculatus AP2/ERF (ERF035) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361214.11e-145ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-63ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A140WWF70.0A0A140WWF7_LOTCO; AP2/ERF
STRINGXP_007158572.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]