PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2051180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 320aa    MW: 36727.1 Da    PI: 6.0402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2051180.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Lj2g3v2051180.1 14 RGLWSPEEDDKLIQYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP

2Myb_DNA-binding53.26.8e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T eE++l++ ++ + G++ W+ Ia++++ gRt++++k++w+++
  Lj2g3v2051180.1  67 RGRFTLEEEKLIITLHSLVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.107961IPR017930Myb domain
SuperFamilySSF466891.35E-2911108IPR009057Homeodomain-like
SMARTSM007173.5E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001675.65E-111761No hitNo description
PROSITE profilePS5129425.29462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2465116IPR009057Homeodomain-like
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567111IPR001005SANT/Myb domain
CDDcd001675.13E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRHSCCNQQ KVKRGLWSPE EDDKLIQYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TLEEEKLIIT LHSLVGNRWA HIASHLPGRT DNEIKNYWNS WIRKKIRKPS  120
SITNPPQSVD HHHPLQLNYN LNKVDHFANQ ENTIAKPPLQ DTLFSPTRPI FMFDTTSTEV  180
TTNASAVLFQ ETFDLSPETW HLSNHQVEAI TPHLPTTFTA AEVIDPTNYY LPPLIENEEN  240
VVPIESCNVK DEGEVITLES MQRQELNSDW VETQQQCPSF LFWDNTHNSN FDVQLGGGEL  300
APNSSNMGTN TLSPFPFSTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167108B-MYB
1h8a_C3e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2051180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360323.11e-160transcription factor MYB8-like
TrEMBLA0A151TJX71e-158A0A151TJX7_CAJCA; Transcription factor MYB86
STRINGXP_007158529.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-96myb domain protein 103