PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2051180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36727.1 Da PI: 6.0402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl Lj2g3v2051180.1 14 RGLWSPEEDDKLIQYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T eE++l++ ++ + G++ W+ Ia++++ gRt++++k++w+++ Lj2g3v2051180.1 67 RGRFTLEEEKLIITLHSLVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.107 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.65E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.294 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRHSCCNQQ KVKRGLWSPE EDDKLIQYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TLEEEKLIIT LHSLVGNRWA HIASHLPGRT DNEIKNYWNS WIRKKIRKPS 120 SITNPPQSVD HHHPLQLNYN LNKVDHFANQ ENTIAKPPLQ DTLFSPTRPI FMFDTTSTEV 180 TTNASAVLFQ ETFDLSPETW HLSNHQVEAI TPHLPTTFTA AEVIDPTNYY LPPLIENEEN 240 VVPIESCNVK DEGEVITLES MQRQELNSDW VETQQQCPSF LFWDNTHNSN FDVQLGGGEL 300 APNSSNMGTN TLSPFPFSTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 3e-25 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2051180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360323.1 | 1e-160 | transcription factor MYB8-like | ||||
TrEMBL | A0A151TJX7 | 1e-158 | A0A151TJX7_CAJCA; Transcription factor MYB86 | ||||
STRING | XP_007158529.1 | 1e-159 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 1e-96 | myb domain protein 103 |