PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2017420.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 336aa    MW: 36577.7 Da    PI: 4.8424
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2017420.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.57.7e-37231142102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++lisw+++gnsf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll+
  Lj2g3v2017420.2  23 FLTKTYQLVDDPSVDDLISWNKDGNSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFRRGQKDLLR 107
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Lj2g3v2017420.2 108 DIQRRKI 114
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-6119112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.29E-3620112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3920112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-212346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3323112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-217486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTSAEQTGES APADSQRAIP TPFLTKTYQL VDDPSVDDLI SWNKDGNSFI VWRPAEFARD  60
LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDGFRR GQKDLLRDIQ RRKISSVAAA  120
TTATANAVTV AVAAPALAVV SPATSGDEQV LSSNSSALAA AYNSNPVLHR TTSCTTAPEL  180
LEENERLRKE NILMSQELSQ LKGLCSNVFA LMNNYASGVS RQPESSSAGR AVSAPEKTLL  240
ELIPAKDLTM HVAGGVGDAA AGTPCEKEVP KLFGVSIGLK RHRIECEVEE EREERNQNSQ  300
MQSSSQEPDG GSDMKSGQPV DGDDSADQEP WLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-282311820125Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.89650.0cell culture| floral bud| pod| protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2017420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061480.0AP006148.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT41D09, TM0304, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914182.11e-155heat stress transcription factor B-2b
RefseqXP_027914183.11e-155heat stress transcription factor B-2b
RefseqXP_027914184.11e-155heat stress transcription factor B-2b
RefseqXP_027914186.11e-155heat stress transcription factor B-2b
RefseqXP_027914187.11e-155heat stress transcription factor B-2b
RefseqXP_027914188.11e-155heat stress transcription factor B-2b
SwissprotQ9T0D32e-94HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A4D6LT091e-154A0A4D6LT09_VIGUN; Heat shock transcription factor 1
STRINGXP_007158472.11e-151(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-72HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]