PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2017420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HSF | ||||||||
Protein Properties | Length: 336aa MW: 36577.7 Da PI: 4.8424 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.5 | 7.7e-37 | 23 | 114 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+++++lisw+++gnsf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll+ Lj2g3v2017420.1 23 FLTKTYQLVDDPSVDDLISWNKDGNSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFRRGQKDLLR 107 9*****************************************************************99.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k Lj2g3v2017420.1 108 DIQRRKI 114 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.2E-61 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.29E-36 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-39 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.0E-21 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.6E-33 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-21 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-21 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MTSAEQTGES APADSQRAIP TPFLTKTYQL VDDPSVDDLI SWNKDGNSFI VWRPAEFARD 60 LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDGFRR GQKDLLRDIQ RRKISSVAAA 120 TTATANAVTV AVAAPALAVV SPATSGDEQV LSSNSSALAA AYNSNPVLHR TTSCTTAPEL 180 LEENERLRKE NILMSQELSQ LKGLCSNVFA LMNNYASGVS RQPESSSAGR AVSAPEKTLL 240 ELIPAKDLTM HVAGGVGDAA AGTPCEKEVP KLFGVSIGLK RHRIECEVEE EREERNQNSQ 300 MQSSSQEPDG GSDMKSGQPV DGDDSADQEP WLELGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-28 | 23 | 118 | 20 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.8965 | 0.0 | cell culture| floral bud| pod| protoplast| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2017420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006148 | 0.0 | AP006148.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT41D09, TM0304, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027914182.1 | 1e-155 | heat stress transcription factor B-2b | ||||
Refseq | XP_027914183.1 | 1e-155 | heat stress transcription factor B-2b | ||||
Refseq | XP_027914184.1 | 1e-155 | heat stress transcription factor B-2b | ||||
Refseq | XP_027914186.1 | 1e-155 | heat stress transcription factor B-2b | ||||
Refseq | XP_027914187.1 | 1e-155 | heat stress transcription factor B-2b | ||||
Refseq | XP_027914188.1 | 1e-155 | heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 2e-94 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A4D6LT09 | 1e-154 | A0A4D6LT09_VIGUN; Heat shock transcription factor 1 | ||||
STRING | XP_007158472.1 | 1e-151 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 2e-72 | HSF family protein |
Publications ? help Back to Top | |||
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