PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1985010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LSD
Protein Properties Length: 146aa    MW: 15222.8 Da    PI: 7.5241
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1985010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.11.2e-122953125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL YP GA+ V+Ca+C++V
  Lj2g3v1985010.1 29 CSGCRNLLLYPVGATTVCCAVCNAV 53
                     ************************9 PP

2zf-LSD144.42.7e-146892125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC+tl++Y rGA+sV+C++C+tV
  Lj2g3v1985010.1 68 CGGCHTLIMYIRGATSVQCSCCHTV 92
                     ************************9 PP

3zf-LSD136.48.4e-12106130125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C+ lL+Y +GA sV+Ca+C +V
  Lj2g3v1985010.1 106 CGNCKMLLMYQYGAGSVKCAVCSFV 130
                      **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.9E-122656IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.0E-146594IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-116892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.9E-10103133IPR005735Zinc finger, LSD1-type
PfamPF069434.7E-11106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT TPPALYTHAP NGAQSQLVCS GCRNLLLYPV GATTVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLIMYIRG ATSVQCSCCH TVNLALEANQ VAHVHCGNCK MLLMYQYGAG  120
SVKCAVCSFV TLVEASTSIN EQKIST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.258920.0pod
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1985010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1345520.0BT134552.1 Lotus japonicus clone JCVI-FLLj-17J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075917.13e-85protein LOL1
RefseqXP_012075918.13e-85protein LOL1
RefseqXP_012075919.13e-85protein LOL1
SwissprotQ93ZB17e-73LOL1_ARATH; Protein LOL1
TrEMBLI3S2551e-97I3S255_LOTJA; Uncharacterized protein
STRINGcassava4.1_018557m4e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-58lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]