PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1985010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LSD | ||||||||
Protein Properties | Length: 146aa MW: 15222.8 Da PI: 7.5241 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.1 | 1.2e-12 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+ V+Ca+C++V Lj2g3v1985010.1 29 CSGCRNLLLYPVGATTVCCAVCNAV 53 ************************9 PP | |||||||
2 | zf-LSD1 | 44.4 | 2.7e-14 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tl++Y rGA+sV+C++C+tV Lj2g3v1985010.1 68 CGGCHTLIMYIRGATSVQCSCCHTV 92 ************************9 PP | |||||||
3 | zf-LSD1 | 36.4 | 8.4e-12 | 106 | 130 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA sV+Ca+C +V Lj2g3v1985010.1 106 CGNCKMLLMYQYGAGSVKCAVCSFV 130 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.9E-12 | 26 | 56 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.2E-10 | 29 | 53 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.0E-14 | 65 | 94 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.9E-10 | 103 | 133 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.7E-11 | 106 | 130 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MPVPLAPYPT TPPALYTHAP NGAQSQLVCS GCRNLLLYPV GATTVCCAVC NAVTAVPPPG 60 TEMAQLVCGG CHTLIMYIRG ATSVQCSCCH TVNLALEANQ VAHVHCGNCK MLLMYQYGAG 120 SVKCAVCSFV TLVEASTSIN EQKIST |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25892 | 0.0 | pod |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1985010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT134552 | 0.0 | BT134552.1 Lotus japonicus clone JCVI-FLLj-17J14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075917.1 | 3e-85 | protein LOL1 | ||||
Refseq | XP_012075918.1 | 3e-85 | protein LOL1 | ||||
Refseq | XP_012075919.1 | 3e-85 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 7e-73 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | I3S255 | 1e-97 | I3S255_LOTJA; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 4e-83 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-58 | lsd one like 1 |
Publications ? help Back to Top | |||
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