PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1984450.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 288aa    MW: 32114.4 Da    PI: 6.4161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1984450.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09109156355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L  +lP +      +++  +iL  A+ Y+k+Lq
  Lj2g3v1984450.1 109 QEHIIAERKRREKLSQNFIALSAILPGL-----ARMDRGSILGVAIMYVKQLQ 156
                      6899***********************7.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-14105167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.129106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-7109156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14110166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-10111160No hitNo description
SMARTSM003536.5E-10112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDCFACPYDD FDMHSFSTLP DSDSSYQCFN YETTPNFVPA EVSNYSVASA KPTSDMIMPS  60
SSPIPSQLIS FNHFNNPALV SQGASEDSIF SNYGNPPNQF AARTPTQTQE HIIAERKRRE  120
KLSQNFIALS AILPGLARMD RGSILGVAIM YVKQLQEQVQ TLEEQAAKEG VGSALLVKRS  180
VLFISDDSLT KSDKIFDNHC YKSLPEIRVR VSGNDVLIKI HCHKQSGYET IILGEIEKHD  240
HLTVHSFSFL PFGNTIIDAT IIAKMNKENC KTSKDIVRSL QQALKQII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119ERKRRE
2115120RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1984450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102770.0AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence.
GenBankAP0107900.0AP010790.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT40A14, TM0543b, complete sequence.
GenBankFJ3797550.0FJ379755.1 Lotus japonicus putative basic helix-loop-helix protein BHLH18 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245026.19e-98transcription factor bHLH18-like isoform X3
TrEMBLC0JP200.0C0JP20_LOTJA; Putative basic helix-loop-helix protein BHLH18
STRINGGLYMA01G40600.25e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein