PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1965110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25847.3 Da PI: 8.0955 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.5 | 2.9e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++p+ +r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q Lj2g3v1965110.1 2 SCNGCRVLRKGCSESCILRPCLqwidtAEAQGHATVFVAKFFGRADLMSFISNVPQPQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6*********************9999777889************************************************************** PP DUF260 90 lkaelall 97 +++e++l+ Lj2g3v1965110.1 96 AAVETVLR 103 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.656 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDTAE AQGHATVFVA KFFGRADLMS FISNVPQPQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPL PELLGLDAPS 120 HVPTAADDAS EGEVTYDTWR IRDPNPNARL TNSRSSAGKR QRPEELAKLQ TTTDLNLRLT 180 PGFLQNVSSY GCKREARRPG SPSMNSEESV TTTACLGSGI GDHCSRDEDR KVLKLFV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1965110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006432 | 2e-52 | AP006432.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT14C18, TM0330, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027361406.1 | 1e-144 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SZE8 | 2e-79 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A445M5C5 | 1e-136 | A0A445M5C5_GLYSO; LOB domain-containing protein 38 | ||||
TrEMBL | I1J9D3 | 1e-136 | I1J9D3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G40010.1 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 7e-82 | LOB domain-containing protein 39 |