PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1965100.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 75aa MW: 8446.93 Da PI: 8.3965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1965100.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	49.6	1.1e-15	2	62	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++p+ +r++ Lj2g3v1965100.1 2 SCNGCRVLRKGCSESCILRPCLqwidtAEAQGHATVFVAKFFGRADLMSFISNVPQPQRPC 62 6*******************9999777889************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.752	1	75	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-12	2	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTAE AQGHATVFVA KFFGRADLMS FISNVPQPQR 60 PCNFPLPHLL QLFLH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1965100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006432	7e-53	AP006432.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT14C18, TM0330, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511855.1	1e-37	LOB domain-containing protein 37 isoform X1
Refseq	XP_027193383.1	6e-38	LOB domain-containing protein 38 isoform X2
Swissprot	Q9FN11	3e-33	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SZE8	2e-33	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A3Q7XXC2	1e-36	A0A3Q7XXC2_CICAR; LOB domain-containing protein 38 isoform X2
STRING	XP_004511855.1	4e-37	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20233	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-35	LOB domain-containing protein 39

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]