PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1915610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 173aa MW: 19153.6 Da PI: 10.4766 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.7 | 3.6e-20 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + Lj2g3v1915610.1 18 KGPWSPEEDEALQRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 63 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 72 | 114 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Lj2g3v1915610.1 72 AFTAEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 114 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.052 | 13 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.53E-33 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-18 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-20 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.16E-17 | 20 | 62 | No hit | No description |
SMART | SM00717 | 5.1E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.302 | 70 | 119 | IPR017930 | Myb domain |
CDD | cd00167 | 2.04E-11 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 72 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-14 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MNTNTNTNTS ITKMDRIKGP WSPEEDEALQ RLVEKHGPRN WSLISKSIPG RSGKSCRLRW 60 CNQLSPQVEH RAFTAEEDDT IIRAHARFGN KWATIARLLS GRTDNAIKNH WNSTLKRKCA 120 SFMMDDHNAP PLKRSVSAGA ATPVSTGLYM NPPSPGSPSR SDVSQSSVPV CTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-42 | 17 | 119 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-41 | 17 | 119 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-41 | 17 | 119 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-42 | 17 | 119 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-42 | 17 | 119 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.284 | 0.0 | cell culture| floral bud| flower| pod| protoplast| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1915610.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156759.1 | 1e-104 | hypothetical protein PHAVU_002G015100g | ||||
Swissprot | O23160 | 3e-79 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | V7CHD2 | 1e-103 | V7CHD2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156759.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-75 | myb domain protein r1 |
Publications ? help Back to Top | |||
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