PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1890910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 347aa    MW: 38081.4 Da    PI: 5.5848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1890910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12113159455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L+ l+P++      K +Ka  L +A+ Y+k+Lq
  Lj2g3v1890910.1 113 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKAFLLVEAIYYLKQLQ 159
                      6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-15106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16106170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-11112161No hitNo description
PfamPF000102.6E-10113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAEEDSYNLS SSSSQDEISL FLRQILLRSS SNPNMPPSSN SPLHTTAGAY LSASSQPLPA  60
ANVSSSSLGV SENEADEYDC ESEEGVEALG EEVRTKSLPS SRSSSKRTRA AEVHNLSEKR  120
RRSRINEKMK ALQNLIPNSN KTDKAFLLVE AIYYLKQLQL QMLSMRNGLS LHPMCFSEGL  180
QPLQLSRMSM DSSEGNKSTL LNMTTTLPLQ QENPLHYASS NLNLPSKQVL PNKPSASHHS  240
FVNNLETSFW QEPQILAPHR GSSEAIHGEV IWQHQQSNAI HSDTNPIGGS QGVKELEADI  300
LPTVSLSFGM RTSDPEDNNP LQPCIAGRDQ SGVIIRSSEP NIILTSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.43251e-140floral bud| flower| pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1890910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098512e-75AP009851.1 Lotus japonicus genomic DNA, clone: LjT10I01, TM1711b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216005.11e-126transcription factor SPATULA isoform X1
TrEMBLA0A151TIE61e-125A0A151TIE6_CAJCA; Transcription factor SPATULA
STRINGAES946721e-112(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-33bHLH family protein