PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1890900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 174aa MW: 19649.8 Da PI: 7.9546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.8e-09 | 3 | 47 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e ++ + +a++ + + +W++Ia+ ++ g+ k++k++++ Lj2g3v1890900.1 3 EWSREQEKAFENAIASYAEDdpyRWEKIAAAVP-GKAIKEVKHHYL 47 5********************************.**********96 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 90 | 134 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+++++ + +++G+g+W++I+r++ +Rt+ q+ s+ qky Lj2g3v1890900.1 90 PWTEDEHKQFLLGLEKFGKGDWRSISRHFVVTRTATQVASHAQKY 134 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.8E-4 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.106 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.6E-11 | 3 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-7 | 3 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.97E-7 | 3 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-5 | 3 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.097 | 83 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-17 | 85 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-12 | 87 | 137 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.8E-17 | 87 | 137 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.1E-12 | 87 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-13 | 90 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-10 | 90 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAEWSREQEK AFENAIASYA EDDPYRWEKI AAAVPGKAIK EVKHHYLILL DDVLNIESGL 60 VPPPDYDSFS QGSKSHASRS DNQERRKGTP WTEDEHKQFL LGLEKFGKGD WRSISRHFVV 120 TRTATQVASH AQKYFLRLNS TSNKKRSSIH DITIDNNEGT SAAPQGPITG QKNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-16 | 4 | 86 | 11 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1890900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360796.1 | 9e-77 | transcription factor SRM1-like isoform X2 | ||||
Swissprot | Q9FNN6 | 2e-64 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | I1ND50 | 3e-74 | I1ND50_SOYBN; Uncharacterized protein | ||||
TrEMBL | V7C750 | 3e-74 | V7C750_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA20G01450.1 | 5e-75 | (Glycine max) | ||||
STRING | XP_007153178.1 | 5e-75 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4694 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 8e-67 | MYB family protein |
Publications ? help Back to Top | |||
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