PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1863520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 301aa    MW: 33176.3 Da    PI: 8.7829
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1863520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.97e-38101012102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++++iswse+gn+fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+gk+ell+
  Lj2g3v1863520.1  10 FLTKTYEMVDDPATEDVISWSESGNTFVVWKHADFAKDLLPSYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGKRELLS 94 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k+
  Lj2g3v1863520.1  95 EIKRRKT 101
                      *****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-34799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-39799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-331099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYEMVDD PATEDVISWS ESGNTFVVWK HADFAKDLLP SYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGKR ELLSEIKRRK TVVAQPSAQA PEVGKSGNST  120
SNSGGDEVGS SSTSTSSPGS KNPGSVETTT APPNTLPPAT LQCANLSSEN EKLKKENETL  180
GWELARAKKQ CEELVGFLRE RLKVGPDQIE RIMRKGSYGS DENNAVGEGK CEGEGECLKL  240
FGVWLKEKSF CEKRNNKRER EDQMGFGGPP IPAKVSKTTT VVDFGAVNVK AVMNSSSKVC  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-28510416125Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.89440.0cell culture| floral bud| protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1863520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361035.11e-128heat shock factor protein HSF24-like
SwissprotP223357e-89HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A371F1D81e-127A0A371F1D8_MUCPR; Heat shock factor protein HSF24 (Fragment)
STRINGGLYMA01G39260.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-54heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]