PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1757080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 338aa    MW: 37190.6 Da    PI: 9.0603
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1757080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.55.8e-32130184460
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      vrY+eCl+NhAas+G+h+vDGCgEfmps gee  ++alkCaAC+CHRnFHR+eve e
  Lj2g3v1757080.1 130 VRYRECLRNHAASMGSHVVDGCGEFMPS-GEE-GTEALKCAACECHRNFHRKEVEGE 184
                      89*************************9.666.4789****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.7E-29130181IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-19130184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.3E-28131181IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.012132180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.45E-18263334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27263334IPR009057Homeodomain-like
TIGRFAMsTIGR015655.2E-27273330IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAVRGQGSK DIEIMSTATT TTLGYNLPIR NSSSSSSKLS SPTAGHRTST DQPAPVPVPH  60
TNNNTLIFND SAQPSHHHHH LSAPPLPQTQ NHHHQSQRPT TTDPDLTPSS SPLATTRITA  120
PPPPPPTPLV RYRECLRNHA ASMGSHVVDG CGEFMPSGEE GTEALKCAAC ECHRNFHRKE  180
VEGEQQVPNP SFHSYYKHSN GHLQLPAPQP LPPPQNSSLR FSHAAAGTTP TAGPVPVPPL  240
MMAFGGAAAE SSSEDLNMFQ RNAGAQEAAA LSRKRHRTKF SSQQKDRMME FAEKIGWRIQ  300
KQDEEEVQQF CSQVGVRRKV FKVWMHNNKQ AMKKLHQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-222733291773ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.223370.0protoplast
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1757080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073010.0AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360509.11e-102zinc-finger homeodomain protein 6-like
TrEMBLA0A4P1QTJ07e-99A0A4P1QTJ0_LUPAN; Uncharacterized protein
STRINGGLYMA11G07360.14e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.16e-50homeobox protein 24