PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj2g3v1695250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 124aa MW: 14727.9 Da PI: 9.6991 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.1 | 1.4e-13 | 5 | 48 | 48 | 91 |
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +ek r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Lj2g3v1695250.2 5 REKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48 367889***********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.9E-11 | 6 | 48 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007062 | Biological Process | sister chromatid cohesion | ||||
GO:0005694 | Cellular Component | chromosome | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MPDKREKIVR QRAETRVGCR AMILVRKVSS GKWVVTKFVK EHTHPLSPGK GRRDCVYEQY 60 PNEHDKIREL SQQLAIEKKR SATYKRHLEL IFDYIDEHNE SLSKKIQHIV DCVKDMETKE 120 EQSH |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj2g3v1695250.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341377.1 | 2e-81 | protein FAR1-RELATED SEQUENCE 12-like isoform X1 | ||||
TrEMBL | A0A371H941 | 5e-80 | A0A371H941_MUCPR; Protein FAR1-RELATED SEQUENCE 5 (Fragment) | ||||
STRING | XP_010097543.1 | 1e-78 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-64 | FAR1 family protein |