PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1573090.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 786aa MW: 89465.2 Da PI: 6.885

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1573090.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.5	8.1e-32	87	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e++++ + + +r+r+etr+gCka+l+vk +++g+w+v+++++eHnHel+p Lj2g3v1573090.2 87 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKERHlEGRVKRPRVETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHELVP 177 9*************************************9999996778899**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-30	87	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-32	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-9	567	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.942	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-7	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MEFEPLVLSN EVIEFDMIGL GDDAAAIDIE HPVEDDDEFV NGGNNDPVFA ITSSAATGGP 60 LIPGGGDSIL EPCQGMDFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD GAIIQRSFVC 120 AKEGFRVEKE RHLEGRVKRP RVETRVGCKA MLVVKIQDSG RWVVSSFVKE HNHELVPPDK 180 VHCLRSHRHV SGPAKSLIDT LQGAGIGPSG IMSALIKEYG GITNIGFTER DCRNYMRSSR 240 QRTLGGDTQI LLDYFKSKEA ENPSFFYAVQ GDEDNCMSNI LWVDHKARTN YTYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFETWLE AMSRRPPVSI 360 TTDHDRVIRG AINHVFPDTR HRFCKWHIFK ECQEKLSHVL SEHHDFEADL HKCVNLTESI 420 EEFESCWSSL IDRYGLREHE WLQEIYGYRR QWVPVYLRDS FFAEMSITQR SDSINSYFDG 480 YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTAPLL KTPSPMEKQA AGVYTRRLFI 540 KFQEELVETL TFLANKVGEE EMITVYRVAK YGESHKAYFV RFNFSEIKAT CSCQMFEFSG 600 IVCRHILTVF RVTNILTLPS HYILKRWSRN AKSGVILDDH TTDLLNGGQE SLTIRYNNLR 660 REALKYADKG VSSPKVYDVA MSALREAANK VEAASKNGGR LVILDGACKE DLRQGNEAIT 720 SCSNAQLSSQ ISSSTDDHDR TIGKLTHQLD RARKKCEVYR SNLLSILKAI DEQKLELSVK 780 VQNIKL

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MEFEPLVLSN EVIEFDMIGL GDDAAAIDIE HPVEDDDEFV NGGNNDPVFA ITSSAATGGP  60
LIPGGGDSIL EPCQGMDFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD GAIIQRSFVC  120
AKEGFRVEKE RHLEGRVKRP RVETRVGCKA MLVVKIQDSG RWVVSSFVKE HNHELVPPDK  180
VHCLRSHRHV SGPAKSLIDT LQGAGIGPSG IMSALIKEYG GITNIGFTER DCRNYMRSSR  240
QRTLGGDTQI LLDYFKSKEA ENPSFFYAVQ GDEDNCMSNI LWVDHKARTN YTYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFETWLE AMSRRPPVSI  360
TTDHDRVIRG AINHVFPDTR HRFCKWHIFK ECQEKLSHVL SEHHDFEADL HKCVNLTESI  420
EEFESCWSSL IDRYGLREHE WLQEIYGYRR QWVPVYLRDS FFAEMSITQR SDSINSYFDG  480
YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTAPLL KTPSPMEKQA AGVYTRRLFI  540
KFQEELVETL TFLANKVGEE EMITVYRVAK YGESHKAYFV RFNFSEIKAT CSCQMFEFSG  600
IVCRHILTVF RVTNILTLPS HYILKRWSRN AKSGVILDDH TTDLLNGGQE SLTIRYNNLR  660
REALKYADKG VSSPKVYDVA MSALREAANK VEAASKNGGR LVILDGACKE DLRQGNEAIT  720
SCSNAQLSSQ ISSSTDDHDR TIGKLTHQLD RARKKCEVYR SNLLSILKAI DEQKLELSVK  780
VQNIKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.6879	4e-82	floral bud\| pod

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1573090.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361490.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1LIE2	0.0	I1LIE2_SOYBN; Uncharacterized protein
STRING	GLYMA11G09400.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]