PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1573090.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 796aa MW: 90701.4 Da PI: 6.601

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1573090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.5	8.2e-32	97	187	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e++++ + + +r+r+etr+gCka+l+vk +++g+w+v+++++eHnHel+p Lj2g3v1573090.1 97 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKERHlEGRVKRPRVETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHELVP 187 9*************************************9999996778899**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-30	97	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-32	308	400	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-9	577	622	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.942	588	624	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-7	599	626	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MHMNHDDDEE ELFEPLVLSN EVIEFDMIGL GDDAAAIDIE HPVEDDDEFV NGGNNDPVFA 60 ITSSAATGGP LIPGGGDSIL EPCQGMDFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD 120 GAIIQRSFVC AKEGFRVEKE RHLEGRVKRP RVETRVGCKA MLVVKIQDSG RWVVSSFVKE 180 HNHELVPPDK VHCLRSHRHV SGPAKSLIDT LQGAGIGPSG IMSALIKEYG GITNIGFTER 240 DCRNYMRSSR QRTLGGDTQI LLDYFKSKEA ENPSFFYAVQ GDEDNCMSNI LWVDHKARTN 300 YTYFGDTVTF DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFETWLE 360 AMSRRPPVSI TTDHDRVIRG AINHVFPDTR HRFCKWHIFK ECQEKLSHVL SEHHDFEADL 420 HKCVNLTESI EEFESCWSSL IDRYGLREHE WLQEIYGYRR QWVPVYLRDS FFAEMSITQR 480 SDSINSYFDG YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTAPLL KTPSPMEKQA 540 AGVYTRRLFI KFQEELVETL TFLANKVGEE EMITVYRVAK YGESHKAYFV RFNFSEIKAT 600 CSCQMFEFSG IVCRHILTVF RVTNILTLPS HYILKRWSRN AKSGVILDDH TTDLLNGGQE 660 SLTIRYNNLR REALKYADKG VSSPKVYDVA MSALREAANK VEAASKNGGR LVILDGACKE 720 DLRQGNEAIT SCSNAQLSSQ ISSSTDDHDR TIGKLTHQLD RARKKCEVYR SNLLSILKAI 780 DEQKLELSVK VQNIKL

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MHMNHDDDEE ELFEPLVLSN EVIEFDMIGL GDDAAAIDIE HPVEDDDEFV NGGNNDPVFA  60
ITSSAATGGP LIPGGGDSIL EPCQGMDFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD  120
GAIIQRSFVC AKEGFRVEKE RHLEGRVKRP RVETRVGCKA MLVVKIQDSG RWVVSSFVKE  180
HNHELVPPDK VHCLRSHRHV SGPAKSLIDT LQGAGIGPSG IMSALIKEYG GITNIGFTER  240
DCRNYMRSSR QRTLGGDTQI LLDYFKSKEA ENPSFFYAVQ GDEDNCMSNI LWVDHKARTN  300
YTYFGDTVTF DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFETWLE  360
AMSRRPPVSI TTDHDRVIRG AINHVFPDTR HRFCKWHIFK ECQEKLSHVL SEHHDFEADL  420
HKCVNLTESI EEFESCWSSL IDRYGLREHE WLQEIYGYRR QWVPVYLRDS FFAEMSITQR  480
SDSINSYFDG YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTAPLL KTPSPMEKQA  540
AGVYTRRLFI KFQEELVETL TFLANKVGEE EMITVYRVAK YGESHKAYFV RFNFSEIKAT  600
CSCQMFEFSG IVCRHILTVF RVTNILTLPS HYILKRWSRN AKSGVILDDH TTDLLNGGQE  660
SLTIRYNNLR REALKYADKG VSSPKVYDVA MSALREAANK VEAASKNGGR LVILDGACKE  720
DLRQGNEAIT SCSNAQLSSQ ISSSTDDHDR TIGKLTHQLD RARKKCEVYR SNLLSILKAI  780
DEQKLELSVK VQNIKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.6879	4e-82	floral bud\| pod

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1573090.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361490.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1LIE2	0.0	I1LIE2_SOYBN; Uncharacterized protein
STRING	GLYMA11G09400.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]