PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1550200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family BES1
Protein Properties Length: 660aa    MW: 74537.1 Da    PI: 6.2108
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1550200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822153.22e-47511921137
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas.aspess 93 
                      +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvv++DGttyr+ + p+   +++gs+a  +s+e++
  Lj2g3v1550200.1  51 AGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQ-CPPP---SHMGSFAAaRSVETQ 140
                      5899******************************************************************5.4444...355555543677777 PP

           DUF822  94 lq.sslkssalaspvesysaspksssfpspssldsislasa.......asll 137
                      l+  sl++++++  +e++ ++++ ++ +sp+s+ds+ la+        as +
  Lj2g3v1550200.1 141 LSaGSLRACSVKETLENQPPVLRIDECLSPASIDSVVLAERdsksrkfASAS 192
                      77779********************************998865444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.7E-4952200IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514457.17E-158218650IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.0E-170221649IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.9E-85242626IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56258272IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56279297IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56301322IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56394416IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56467486IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56501517IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56518529IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56536559IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-56574596IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MKNTNDDVSA QDLDPQSDHS SDYLAHSHQL SQPQPRRPRG FAAAAAGVNS AGKGKKEREK  60
EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV LAALAREAGW VVDADGTTYR  120
QCPPPSHMGS FAAARSVETQ LSAGSLRACS VKETLENQPP VLRIDECLSP ASIDSVVLAE  180
RDSKSRKFAS ASPIDSVDCL EADQLMQVMH TGVHENDFTG TPYVPVYIKL PVGIINKFCQ  240
LIDPEGIRQE LIHIKSLNID GVVVDCWWGI VEGWSPQKYV WSGYRELFNI IREFKLNLQV  300
VMAFHECGGS DSSDALISLP QWVLDIGKDN QDIFFTDREG RRNTECLSWG IDKERVLKGR  360
TGIEVYFDMM RSFRTEFDDL FAEGLISSVE IGLGASGELK YPSFSERMGW RYPGIGEFQC  420
YDKYLQHSLR RAAKLRGHSF WARGPDNAGH YNSMPHETGF FCERGDYDNY YGRFFLHWYS  480
QTLVDHADNV LSLASLAFEE TQIIVKVPAV YWWYKTPSHA AELTAGYHNP TNQDGYSPVF  540
EVLKKHAVTM KFVCLGFHLS SQEANESLVD PEGLSWQVLN SAWDRGLIAA GENALLCYDR  600
EGHKRLVEMA KPRNDPDRRH FSFFVYQQPS LLQGNPCLSE LDFFIKCMHA ILAGEMTGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12722361311401Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.93900.0floral bud| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1550200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0091540.0AP009154.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT10G21, TM1522, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360152.10.0beta-amylase 8 isoform X1
RefseqXP_027360153.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S2YZF60.0A0A1S2YZF6_CICAR; Beta-amylase
STRINGXP_004512346.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]