PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1537380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRF | ||||||||
Protein Properties | Length: 339aa MW: 37748.3 Da PI: 9.5836 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 66.1 | 4.7e-21 | 87 | 131 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++ +++k+C+rH+ r r rsrk++e+ Lj2g3v1537380.1 87 DPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVES 131 79****************************************986 PP | |||||||
2 | QLQ | 53.7 | 6.1e-19 | 32 | 67 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+l++KyL a++ vPp+Ll++i+k Lj2g3v1537380.1 32 PFTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRK 67 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-10 | 31 | 67 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.637 | 32 | 67 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.7E-14 | 32 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.663 | 87 | 131 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.6E-18 | 88 | 130 | IPR014977 | WRC domain |
PROSITE pattern | PS00070 | 0 | 280 | 291 | IPR016160 | Aldehyde dehydrogenase, cysteine active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MPVSLSSIQP SFLKPQSQMM SVPPPPVMWP PPFTVSQWQE LEHQALIFKY LKAGLSVPPD 60 LLVPIRKSLQ LMSHPHSSLG YYGKKIDPEP GRCRRTDGKK WRCAKDAHPD SKYCDRHMIR 120 RRYRSRKPVE SQPQPSSSSS SSQLAASTAG SGSTAKTASA AVTTFQNNLP LHTNGAREGF 180 SFTLGNSTSQ LHMDTSKKPY RFELTNEAEE HSLLQKDLGS VKYQGYDFTS DGMWSHMHQI 240 PSNTISESRS GSAIVGNCFQ QRTTRDAELL NLDTARSKEL AFSGQVCSAG RLKQEYQSPQ 300 SLFSDWHWKK DLGSSATAYR PNKDFNCNPD INADSSGSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1537380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-48 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516492.1 | 1e-160 | growth-regulating factor 3 | ||||
Refseq | XP_028239299.1 | 1e-160 | growth-regulating factor 3-like | ||||
TrEMBL | A0A445M348 | 1e-159 | A0A445M348_GLYSO; Growth-regulating factor 3 | ||||
TrEMBL | K7K3Y3 | 1e-159 | K7K3Y3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G35145.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14948 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-37 | growth-regulating factor 5 |