PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1436910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24392.4 Da PI: 5.5876 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 37 | 138 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++ap+f +q p++fa+vhk+FGasnv+k+l ++p ++r++a+++++yeA+ar++dPvyG+v +il+lqqq+++l+++ Lj2g3v1436910.1 37 PCGACKFLRRKCSSECIFAPHFDPDQgPARFAAVHKVFGASNVSKFLMNIPMNRRDEAVTTICYEAQARLSDPVYGCVPTILNLQQQVASLQEQ 130 7*********************777769****************************************************************** PP DUF260 94 lallkeel 101 l +l++++ Lj2g3v1436910.1 131 LTMLQTQI 138 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-40 | 37 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSEQQGGDGT STVRRRGATS RRGMATPDIE AAAPTGPCGA CKFLRRKCSS ECIFAPHFDP 60 DQGPARFAAV HKVFGASNVS KFLMNIPMNR RDEAVTTICY EAQARLSDPV YGCVPTILNL 120 QQQVASLQEQ LTMLQTQIIH GSLAYPNVLQ STQEQQHTNI GFQSAYPNFN PGFDYAMETA 180 PSSHNLEPVQ FSQLPKYEEE DEEECKIPPL LNNDIVFPRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 32 | 139 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 32 | 139 | 1 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1436910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019428564.1 | 9e-81 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 6e-57 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0B2PE62 | 3e-82 | A0A0B2PE62_GLYSO; LOB domain-containing protein 20 | ||||
STRING | GLYMA10G11031.1 | 3e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-59 | LOB domain-containing protein 20 |