PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1316330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 201aa MW: 23244.1 Da PI: 8.2622 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.2e-18 | 2 | 48 | 10 | 56 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Lj2g3v1316330.1 2 EQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 48 8*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.6 | 4.6e-40 | 2 | 84 | 9 | 91 |
HD-ZIP_I/II 9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+yda+k++n++L++++++L++e+ Lj2g3v1316330.1 2 EQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKSDNDALQAHNQKLQAEI 84 9*******************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 5.28E-14 | 1 | 51 | No hit | No description |
SMART | SM00389 | 8.7E-11 | 1 | 54 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.714 | 1 | 50 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-17 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 2 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.6E-15 | 2 | 48 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.5E-6 | 21 | 30 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 25 | 48 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-6 | 30 | 46 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.6E-17 | 50 | 90 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEQVKTLEKS FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDLLK 60 RQYDAIKSDN DALQAHNQKL QAEILALKNR EPTESINLNK ETEGSSSNRS ENSSDIKLDI 120 SRTPAIDSPL STHHHNSRTL FPPSARPAGS VAHQLFQSSS RPDLQCQKMD HMVKEESLSN 180 MFCGMDDQSG FWPWLEQQHF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 50 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5754 | 0.0 | floral bud| flower| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1316330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140439 | 0.0 | BT140439.1 Lotus japonicus clone JCVI-FLLj-18M14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157668.1 | 1e-128 | hypothetical protein PHAVU_002G088600g | ||||
Swissprot | Q8LC03 | 1e-88 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | I3SIZ2 | 1e-147 | I3SIZ2_LOTJA; Uncharacterized protein | ||||
STRING | XP_007157668.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 4e-84 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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