PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1168830.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 375aa    MW: 41327.9 Da    PI: 7.9363
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1168830.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31208263156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W++eLH+rF++a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQk+Rl+
  Lj2g3v1168830.1 208 KQRRCWSQELHKRFLHALQQLGGPDVATPKQIREHMKVDGLTNDEVKSHLQKFRLH 263
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.166205265IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-27205266IPR009057Homeodomain-like
SuperFamilySSF466899.86E-18206266IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-27208263IPR006447Myb domain, plants
PfamPF002491.5E-7210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLFSQKMQPH KMGSREYIQA LEEERKKIQV FPRELPLSLE LVTQAIEACR QQLSGTTTDY  60
NLNNGQSECS GQTSTEDGPV FEEFFPMKKR AAPDCDEKDE DDDDDELHSH KKKSDWLRSV  120
QLWNPNPSTT KEDLPRKTNV VEVKRNGGAF HPFHREESGV GKASNVVSAA CKAPSSPPVP  180
ATSSTGPVRV DSNDGGSKRD EKGQAQRKQR RCWSQELHKR FLHALQQLGG PDVATPKQIR  240
EHMKVDGLTN DEVKSHLQKF RLHTRRSPVI HNNANSQTTP LFLVGNIYVQ PSEYGAVATT  300
TTGSGELTKV TAPSGIYAPV AAHPPATAVM KSPQLKQLEV SSNSEERTNH SEGAVHSNSA  360
ASSSSTHTTT TSPRC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.108870.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1168830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3533020.0AB353302.1 Lotus japonicus MYB mRNA for MYB-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360963.10.0transcription factor HHO3-like
TrEMBLD2KTV30.0D2KTV3_LOTJA; MYB-type transcription factor
STRINGXP_007153350.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.14e-75G2-like family protein