PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj2g3v1058120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 208aa MW: 22328 Da PI: 8.773 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.5 | 1.6e-33 | 64 | 121 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNh aslGgha+DGCgEfmps++++ +++++kCaACgCHRnFHRre+ee Lj2g3v1058120.1 64 TVTYKECLKNHVASLGGHALDGCGEFMPSPTATaDDPSSIKCAACGCHRNFHRREPEE 121 699***************************999889******************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-28 | 65 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-23 | 65 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.3E-30 | 66 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.54 | 67 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MEVLTTATNN ITSTAKSPEP ETETPTRIQQ PGNVNATAKP LSFSNGVLKR HHPPAPHANH 60 SPVTVTYKEC LKNHVASLGG HALDGCGEFM PSPTATADDP SSIKCAACGC HRNFHRREPE 120 EPPITAAHHV FEYQPHHRHH PPPPVPFNRS PNSASPPPIS SYPSAPHMLL ALSGAGLPVP 180 PENTAAPTQT PGSDSRKRFR TKFTPGQK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.12844 | 1e-120 | cell culture |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj2g3v1058120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP010571 | 0.0 | AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence. | |||
GenBank | AP010572 | 0.0 | AP010572.1 Lotus japonicus genomic DNA, clone: LjT38M11, TM1877, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027358362.1 | 1e-81 | zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1S2XQ38 | 6e-68 | A0A1S2XQ38_CICAR; zinc-finger homeodomain protein 9 | ||||
STRING | XP_004491795.1 | 1e-68 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15210.1 | 7e-42 | homeobox protein 30 |