PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1058090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 69aa MW: 7672.61 Da PI: 8.781 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.5 | 2.1e-30 | 19 | 69 | 3 | 54 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHR 54 +v+Y eC+kNhAa++Gg+avDGC+Efm+s geegt+++l CaACgCHRnFH+ Lj2g3v1058090.1 19 SVKYGECQKNHAANVGGYAVDGCREFMAS-GEEGTSDSLACAACGCHRNFHK 69 699*************************9.999******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 1 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.9E-29 | 20 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-25 | 21 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.573 | 22 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MRKRQVVVRR EDPQRNVRSV KYGECQKNHA ANVGGYAVDG CREFMASGEE GTSDSLACAA 60 CGCHRNFHK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9781 | 1e-115 | pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1058090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010571 | 1e-112 | AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence. | |||
GenBank | BT140651 | 1e-112 | BT140651.1 Lotus japonicus clone JCVI-FLLj-7L16 unknown mRNA. | |||
GenBank | BT145354 | 1e-112 | BT145354.1 Lotus japonicus clone JCVI-FLLj-10M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151284.1 | 8e-41 | hypothetical protein PHAVU_004G033400g | ||||
Refseq | XP_020205723.1 | 8e-41 | mini zinc finger protein 2 | ||||
Refseq | XP_020205875.1 | 8e-41 | mini zinc finger protein 2 | ||||
Swissprot | Q9LJW5 | 2e-28 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | I3SY06 | 3e-44 | I3SY06_LOTJA; Uncharacterized protein | ||||
STRING | XP_007151284.1 | 3e-40 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1550 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 8e-31 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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