PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0949390.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 364aa    MW: 40711.5 Da    PI: 9.9441
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0949390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14178224148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W+++Ed  lv +vkq+G   W+++a+ m  +R + qc++rw+++l
  Lj2g3v0949390.1 178 KGHWSKQEDMALVTLVKQYGQSKWSKVAKLMK-KRLGRQCRERWHNHL 224
                      789****************************9.9************97 PP
2Myb_DNA-binding41.33.7e-13230272145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT  Ed++l++ +++lG++ W+ Ia++++ gR+++ + ++w+
  Lj2g3v0949390.1 230 KRPWTMIEDLILIKSHQELGNK-WEEIAKRLP-GRSGNTIMNHWN 272
                      569*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.614173228IPR017930Myb domain
SuperFamilySSF466891.3E-28175271IPR009057Homeodomain-like
SMARTSM007178.5E-15177226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-23179231IPR009057Homeodomain-like
PfamPF139211.3E-15181235No hitNo description
CDDcd001672.09E-13181224No hitNo description
PROSITE profilePS5129413.093229280IPR017930Myb domain
SMARTSM007171.4E-12229277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-19232276IPR009057Homeodomain-like
CDDcd001677.28E-10232275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MFSSPTSVLI PPPHNNPLLN HANTFHHIQD NTHNPDLLME GLSFVSNPIN VPSIPYLGES  60
SQAGSQSGFV NPNPMIPSPN NKMESLYHHQ GGTLIWDFKQ KTTIQSSAVS ASSIAQMGPL  120
IVSQPPPPVD SSEIELVKRA LFEGDLSYLT EIFGTSHDGE QRKNVQAEGD INTANITKGH  180
WSKQEDMALV TLVKQYGQSK WSKVAKLMKK RLGRQCRERW HNHLRPEIKK RPWTMIEDLI  240
LIKSHQELGN KWEEIAKRLP GRSGNTIMNH WNATKKCRNI FKKPETYDGS MLQAYIKRVT  300
ASKESTRETK KKPINKMKMK EAMHTKLNEG VVNGNVDGIA SGSVMDGGIV NGSTIYGYIL  360
EGLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-361752764105B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0949390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-44myb domain protein 98