PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0934070.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 138aa MW: 15381.4 Da PI: 7.8377

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0934070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.8e-43	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC +dC+++pyfp e+p+kf nvhk+FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el Lj2g3v0934070.1 11 PCAACKFLRRKCMSDCIFSPYFPPEEPHKFVNVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKEL 104 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Lj2g3v0934070.1 105 DAANA 109 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.38	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MASSSYSNNS PCAACKFLRR KCMSDCIFSP YFPPEEPHKF VNVHKIFGAS NVSKILNEVL 60 PHQREDAVNS LAYEAEARIK DPVYGCVGAI SVLQRQVLRL QKELDAANAD LIRYSACSET 120 PTTHHGGSGF YYPWNNHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-63	2	119	2	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-63	2	119	2	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0934070.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009666	0.0	AP009666.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT30P12, TM0263, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006579776.1	3e-81	LOB domain-containing protein 25
Refseq	XP_014630864.1	3e-81	LOB domain-containing protein 25
Refseq	XP_028231096.1	3e-81	LOB domain-containing protein 25-like
Refseq	XP_028231097.1	3e-81	LOB domain-containing protein 25-like
Swissprot	Q9FML4	5e-69	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A445KHB7	7e-80	A0A445KHB7_GLYSO; LOB domain-containing protein 25 isoform A
TrEMBL	K7KNN7	7e-80	K7KNN7_SOYBN; Uncharacterized protein
STRING	GLYMA05G08870.2	1e-80	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-71	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]