PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0906460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 277aa    MW: 30530 Da    PI: 5.6473
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0906460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + +++G+g +W + + + g++R++k+c++rw++yl
  Lj2g3v0906460.1 14 RGPWSPEEDATLKSYLEKHGTGgNWIALPPKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding47.15.5e-1571111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eEde+++++    G++ W++Ia+ ++ gRt++++k++w++
  Lj2g3v0906460.1  71 FTEEEDEIIYNLYSSIGSR-WSLIAAQFP-GRTDNDVKNHWNT 111
                      9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.806962IPR017930Myb domain
SuperFamilySSF466893.05E-2811109IPR009057Homeodomain-like
SMARTSM007171.1E-111364IPR001005SANT/Myb domain
PfamPF002498.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-231569IPR009057Homeodomain-like
CDDcd001676.66E-91662No hitNo description
PROSITE profilePS5129420.69263117IPR017930Myb domain
SMARTSM007179.4E-1367115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2270116IPR009057Homeodomain-like
PfamPF002493.9E-1370111IPR001005SANT/Myb domain
CDDcd001671.06E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRAPCCDKS SVKRGPWSPE EDATLKSYLE KHGTGGNWIA LPPKAGLNRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDEIIY NLYSSIGSRW SLIAAQFPGR TDNDVKNHWN TKLKKKFLAA  120
SSSTIVTGNT ISKTSCPDQF SAFTFQPQVD QAFFLDQKRN SACFVPNNVL DLEPAAIPVP  180
LTMPLETEAS SYTESSLGSN CNTPPFKEVS VFSSAPSLAE QNSHVQWYEN GHEGEDDGVF  240
LEFVLEDLLN HGFASLDKSS QVAPSSGNQD CSYSSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0906460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028631e-120DQ902863.1 Glycine max transcription factor MYBJ6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359453.11e-133transcription factor MYB36-like
TrEMBLA0A151T2Z61e-116A0A151T2Z6_CAJCA; Transcription factor RAX3
STRINGXP_007152944.11e-114(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-66myb domain protein 36