PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0896450.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 457aa MW: 51623.5 Da PI: 7.3812

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0896450.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.7	1.9e-35	47	190	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kve+++ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Lj2g3v0896450.3 47 LPAGVKFDPTDQELI-EHLEAKVEARNnmrshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqnecdlq 138 799**********.99**99976665443333333766646******.555666799**************845555544 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Lj2g3v0896450.3 139 GGETRWHKTGKTRPVMM-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 190 33778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-38	42	209	IPR003441	NAC domain
PROSITE profile	PS51005	32.812	47	209	IPR003441	NAC domain
Pfam	PF02365	3.9E-16	48	190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MNKMNNLSSV SSSDLIDAKL EEHQLGGSKQ CPGCGHKFEG KRDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA RNNMRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA 120 YTTGTRKRRK IQNECDLQGG ETRWHKTGKT RPVMMNGKQK GCKKILVLYT NFGKNRKPEK 180 TNWVMHQYHL GQHEEEREGE LVVSKIFYQT QPRQCNWSDR SACTTGEGSG ELPNGGRRDS 240 GSGSCSSKEI VPTHRDEMTS VIVSGVNPMT GFTHALDIQQ QLKSDHFSFI PFRKSFDHEV 300 GIVEASTARE VQASGSCEEV HERHRQHVTH HHQQQQQQQQ HHHQIANSAF HISRPSHPIS 360 TIISPLPAPL HHTSIILDEN SCHVNRVMLQ NDNFQQQQQQ HHKLGGRSAS GLEELIMGCT 420 SSSTDIKPGS TITNPQEAEW LKYSSYWPDP DNPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MNKMNNLSSV SSSDLIDAKL EEHQLGGSKQ CPGCGHKFEG KRDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA RNNMRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA  120
YTTGTRKRRK IQNECDLQGG ETRWHKTGKT RPVMMNGKQK GCKKILVLYT NFGKNRKPEK  180
TNWVMHQYHL GQHEEEREGE LVVSKIFYQT QPRQCNWSDR SACTTGEGSG ELPNGGRRDS  240
GSGSCSSKEI VPTHRDEMTS VIVSGVNPMT GFTHALDIQQ QLKSDHFSFI PFRKSFDHEV  300
GIVEASTARE VQASGSCEEV HERHRQHVTH HHQQQQQQQQ HHHQIANSAF HISRPSHPIS  360
TIISPLPAPL HHTSIILDEN SCHVNRVMLQ NDNFQQQQQQ HHKLGGRSAS GLEELIMGCT  420
SSSTDIKPGS TITNPQEAEW LKYSSYWPDP DNPDHHG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0896450.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027359513.1	0.0	NAC domain-containing protein 75 isoform X1
Refseq	XP_027359514.1	0.0	NAC domain-containing protein 75 isoform X1
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A445LWZ4	0.0	A0A445LWZ4_GLYSO; NAC domain-containing protein 75 isoform A
TrEMBL	K7K143	0.0	K7K143_SOYBN; Uncharacterized protein
STRING	GLYMA01G00880.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-178	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]