PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0777020.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Trihelix

Protein Properties

Length: 357aa MW: 41078 Da PI: 4.4572

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0777020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	5.7e-15	121	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++ +l+L+e+ ++ +++r++l+ W ev++k+ e ++er+ qC + +++l++rykk+k++ + ss ++p+f++++ Lj2g3v0777020.1 121 EWTEHATLVLLEVWGDKFLQIGRNSLRSEEWHEVAEKVsDELKVERTVAQCMSVLDKLKRRYKKEKARIDEMgVGVSSCKWPFFKKMD 208 5***********************************8899*********************9998856778889*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-18	120	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDDMEDDARY PPKSFPLSRQ NPSSHRHKHP NRAAPFHHRP PTTRYKVDEE DDEEFEDAKE 60 FDDYNDDDDA PENGYAGNFE EDDGFARKKR KLRGGPSNYE FAPRAKFPFG NRGGSSSAAE 120 EWTEHATLVL LEVWGDKFLQ IGRNSLRSEE WHEVAEKVSD ELKVERTVAQ CMSVLDKLKR 180 RYKKEKARID EMGVGVSSCK WPFFKKMDML MASSARQEYG LACGVDSGEY VFMNTRVYLN 240 RSNGFDEMRD SPGESETSEE NDSDGVAAGP GGDGDEEDDE TSYRVLADSI QKFGKIYEKI 300 ENTKRQQMME LEKMRLDFNR ELELQKKQIL ERAEAEIAKM QEVDEDETDS STENLSE

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDDMEDDARY PPKSFPLSRQ NPSSHRHKHP NRAAPFHHRP PTTRYKVDEE DDEEFEDAKE  60
FDDYNDDDDA PENGYAGNFE EDDGFARKKR KLRGGPSNYE FAPRAKFPFG NRGGSSSAAE  120
EWTEHATLVL LEVWGDKFLQ IGRNSLRSEE WHEVAEKVSD ELKVERTVAQ CMSVLDKLKR  180
RYKKEKARID EMGVGVSSCK WPFFKKMDML MASSARQEYG LACGVDSGEY VFMNTRVYLN  240
RSNGFDEMRD SPGESETSEE NDSDGVAAGP GGDGDEEDDE TSYRVLADSI QKFGKIYEKI  300
ENTKRQQMME LEKMRLDFNR ELELQKKQIL ERAEAEIAKM QEVDEDETDS STENLSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	RKKRKLR
2	175	180	DKLKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5153	0.0	cell culture\| floral bud\| protoplast\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0777020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019458221.1	1e-179	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_019458222.1	1e-179	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_019458223.1	1e-179	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1J7HT66	1e-177	A0A1J7HT66_LUPAN; Uncharacterized protein
STRING	XP_004512963.1	1e-161	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-87	Trihelix family protein