PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v0738560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 114aa MW: 12355.4 Da PI: 8.996 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.4 | 9.3e-28 | 16 | 112 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++dC+++p++ pa+q++++ +++k++G++ +l+ll+++p++ ++++++sl+yeA+ r+ +P+ G++g++++++++l++ Lj2g3v0738560.1 16 SCNGCRVLRKGCSPDCPIRPCLnwidsPASQANATFFLAKFYGRAGLLNLLTSAPQQLQPAVFKSLLYEACGRIVNPIFGSTGLLSTGSWHLCE 109 6********************************************************************************************9 PP DUF260 90 lka 92 +++ Lj2g3v0738560.1 110 AAV 112 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.472 | 15 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-23 | 16 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MCSSPFNKKI QTMRLSCNGC RVLRKGCSPD CPIRPCLNWI DSPASQANAT FFLAKFYGRA 60 GLLNLLTSAP QQLQPAVFKS LLYEACGRIV NPIFGSTGLL STGSWHLCEA AVNA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.20917 | 0.0 | cell culture| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v0738560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015966681.1 | 4e-58 | LOB domain-containing protein 41 | ||||
Refseq | XP_025701105.1 | 5e-58 | LOB domain-containing protein 41 | ||||
Swissprot | Q9ZW96 | 2e-53 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A445D2Q9 | 1e-56 | A0A445D2Q9_ARAHY; Uncharacterized protein | ||||
STRING | XP_007151649.1 | 3e-55 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-55 | LOB domain-containing protein 40 |