PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v0727360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 36851.2 Da PI: 8.096 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.1 | 1e-54 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+ kv++++++ ++++ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ Lj2g3v0727360.1 5 LPPGFRFHPTDEELITYYLTSKVSDTNFTS-KAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFR 97 79*************************999.88***************988999**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 g lvg+kktLvfykgrap+gek++Wvmheyrle Lj2g3v0727360.1 98 -AGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 .999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-63 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLTSKVSDT NFTSKAVAVV DLNKSEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRAGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENKHHFRTSK DEWVVCRVFQ KTTAAKKLQQ TSSSQPESPC DTTSMVNEFG 180 DVELPNLNNI ASSSGHGLTN INSAQTFNYD LMSNNNVNTN MNLTMNWPPA TGVSSLPWPS 240 GLLNPNINSV NSLLLKALQF RSYNQQKEAA AAEHFATSYM MPQGVSHHLG TDLSSNNLSA 300 SSSRVLECMP QQQHQQEQPF NSDSIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v0727360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142392 | 0.0 | BT142392.1 Lotus japonicus clone JCVI-FLLj-12K23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003620480.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | I3SPJ4 | 0.0 | I3SPJ4_LOTJA; Uncharacterized protein | ||||
STRING | AES76698 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-110 | NAC domain containing protein 58 |