PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0636480.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 87aa    MW: 9761.99 Da    PI: 9.0089
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0636480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind254.8e-083781244
                     HHHHH..HHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHH CS
     HSF_DNA-bind  2 Flkkl..yeiledeelkeliswsengnsfvvldeeefakkvLpky 44
                     Fl+k+  y++++d++++++isw+++ ++f+v++++   k+  p  
  Lj2g3v0636480.1 37 FLTKTyqYQLVQDQSIDDVISWNDDRSTFIVWNPTIRRKHHKPPS 81
                     7888722579***********************876655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-82984IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.99E-73684IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-53783IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MAPPPPLPPV EQNADSSSYP AAVASSLTSH RSISAPFLTK TYQYQLVQDQ SIDDVISWND  60
DRSTFIVWNP TIRRKHHKPP SFKTIIA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0636480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515711.12e-22heat stress transcription factor B-2a
SwissprotQ9SCW43e-14HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1S2Z6165e-21A0A1S2Z616_CICAR; heat stress transcription factor B-2a
STRINGXP_004515711.18e-22(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-16heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]