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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj2g3v0635650.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
BBR-BPC |
Protein Properties |
Length: 288aa MW: 31787.7 Da PI: 10.3296 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj2g3v0635650.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 340.9 | 3.2e-104 | 1 | 288 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.............maflqrdkalaernkalverdn 79
md d+ + rn+gyyepa+s+k++lglqlms+++e+ r++ + ls+ ++a++++ m++ +rd+++++ +++
Lj2g3v0635650.1 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSTMPEKPMFGgRNAAV-LSGANGAFHNHHhrdigmpqaatypMEY-MRDAWISS-------QRD 85
888888888*************************998876355555.999999986555555*************.********.......889 PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
k++++++++ + + +++t++++++q++ p+l+ +ee+ +++ a+ +k k + kkrq +k pk++kakk+k+ ++
Lj2g3v0635650.1 86 KYMHMIPTNP--------SFGGIPETSTAHHIQMIPPPELT------KEESPIDEAV---APVAEKVKGTGKKRQGPKLPKSPKAKKPKRGPHL 162
*******655........4899***********94444443......3333333332...222333445566778899************8888 PP
GAGA_bind 174 skkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
+k++++++ +r++ +kk+ ++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCC t +S+yPLP+stkrrgaRiagrKmS gafkk
Lj2g3v0635650.1 163 PKDENAASV--QRARVPKKTAEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCRTGMSMYPLPMSTKRRGARIAGRKMSIGAFKK 254
877777766..79********************************************************************************* PP
GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+LekLaaeGy++snp+DLk++WAkHGtnkfvtir
Lj2g3v0635650.1 255 VLEKLAAEGYNFSNPIDLKTYWAKHGTNKFVTIR 288
*********************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM STMPEKPMFG GRNAAVLSGA NGAFHNHHHR 60 DIGMPQAATY PMEYMRDAWI SSQRDKYMHM IPTNPSFGGI PETSTAHHIQ MIPPPELTKE 120 ESPIDEAVAP VAEKVKGTGK KRQGPKLPKS PKAKKPKRGP HLPKDENAAS VQRARVPKKT 180 AEIVINGIDM DISSIPIPVC SCTGAPQQCY RWGSGGWQSA CCRTGMSMYP LPMSTKRRGA 240 RIAGRKMSIG AFKKVLEKLA AEGYNFSNPI DLKTYWAKHG TNKFVTIR
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ982316 | 0.0 | FJ982316.1 Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
GenBank | FJ982317 | 0.0 | FJ982317.1 Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC1) gene, complete cds. |