PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0635650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family BBR-BPC
Protein Properties Length: 288aa    MW: 31787.7 Da    PI: 10.3296
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0635650.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind340.93.2e-10412881301
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.............maflqrdkalaernkalverdn 79 
                      md d+  + rn+gyyepa+s+k++lglqlms+++e+     r++ + ls+ ++a++++              m++ +rd+++++       +++
  Lj2g3v0635650.1   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSTMPEKPMFGgRNAAV-LSGANGAFHNHHhrdigmpqaatypMEY-MRDAWISS-------QRD 85 
                      888888888*************************998876355555.999999986555555*************.********.......889 PP

        GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
                      k++++++++         + + +++t++++++q++  p+l+      +ee+ +++     a+  +k k + kkrq +k pk++kakk+k+ ++ 
  Lj2g3v0635650.1  86 KYMHMIPTNP--------SFGGIPETSTAHHIQMIPPPELT------KEESPIDEAV---APVAEKVKGTGKKRQGPKLPKSPKAKKPKRGPHL 162
                      *******655........4899***********94444443......3333333332...222333445566778899************8888 PP

        GAGA_bind 174 skkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
                      +k++++++   +r++ +kk+ ++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCC t +S+yPLP+stkrrgaRiagrKmS gafkk
  Lj2g3v0635650.1 163 PKDENAASV--QRARVPKKTAEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCRTGMSMYPLPMSTKRRGARIAGRKMSIGAFKK 254
                      877777766..79********************************************************************************* PP

        GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      +LekLaaeGy++snp+DLk++WAkHGtnkfvtir
  Lj2g3v0635650.1 255 VLEKLAAEGYNFSNPIDLKTYWAKHGTNKFVTIR 288
                      *********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.6E-1641288IPR010409GAGA-binding transcriptional activator
PfamPF062176.2E-1091288IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM STMPEKPMFG GRNAAVLSGA NGAFHNHHHR  60
DIGMPQAATY PMEYMRDAWI SSQRDKYMHM IPTNPSFGGI PETSTAHHIQ MIPPPELTKE  120
ESPIDEAVAP VAEKVKGTGK KRQGPKLPKS PKAKKPKRGP HLPKDENAAS VQRARVPKKT  180
AEIVINGIDM DISSIPIPVC SCTGAPQQCY RWGSGGWQSA CCRTGMSMYP LPMSTKRRGA  240
RIAGRKMSIG AFKKVLEKLA AEGYNFSNPI DLKTYWAKHG TNKFVTIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.96490.0cell culture| pod
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0635650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823160.0FJ982316.1 Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.
GenBankFJ9823170.0FJ982317.1 Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181773.11e-179protein BASIC PENTACYSTEINE2-like
RefseqXP_028181774.11e-179protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD06e-93BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLH1ZN990.0H1ZN99_LOTJA; GAGA-binding transcriptional activator
STRINGGLYMA09G30040.41e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.37e-92basic pentacysteine 2