PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0550010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 144aa    MW: 15207.7 Da    PI: 9.926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0550010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.2e-11115135526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+++a+ G C+yG+rCkF H+
  Lj2g3v0550010.1 115 VCNYWAQ-GSCSYGERCKFLHS 135
                      6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.222146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7752147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164111137IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6112136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-8114135IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8115135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDVDGGSKRV YHRLGGPGGD ARNQKVCFYW QAGKCDRHPC PYLHSEVVPP HSNSNGTSSK  60
RPHGYADNSS FSGPRRSQNF STWGPGGGRG GGRGGAGRGG GVGGGRGVVV KADKVCNYWA  120
QGSCSYGERC KFLHSWSLGD GFSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105RGGGVGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.220890.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0550010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096400.0AP009640.1 Lotus japonicus genomic DNA, clone: LjB22H06, BM1971, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027358161.16e-56zinc finger CCCH domain-containing protein 48 isoform X2
TrEMBLA0A4P1RCL32e-52A0A4P1RCL3_LUPAN; Uncharacterized protein
STRINGGLYMA09G27300.13e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.17e-30zinc finger WD40 repeat protein 1