PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0391810.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27899.8 Da    PI: 9.6562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0391810.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.95.7e-231865249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +  n+sn qvtfskRr g++KKA+EL++LCd+e+a+++fs+  k++ +
  Lj2g3v0391810.1 18 KMTNESNLQVTFSKRRSGLFKKASELCILCDVEIALVVFSPGEKVFSF 65
                     5689**************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-34968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.553969IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-291092IPR002100Transcription factor, MADS-box
CDDcd002654.61E-371077No hitNo description
PRINTSPR004047.4E-211131IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241965IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-213146IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-214667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSTSRRKSLG RQKIEMKKMT NESNLQVTFS KRRSGLFKKA SELCILCDVE IALVVFSPGE  60
KVFSFGHPSV EAVIKRYFSQ APPQTSDTMQ YIEAQRNSKV HELNVELSQI NNLLDTVRNH  120
GEELNRLHKA AQAQFWWACQ IEEMDRPKLE QFRMALNELK KQISRYCDRT RIHGAPAAST  180
ATTNPPTHMF FASGSSNVMI PPHHPQSPPP QVFAPQFFEG SMKQGHHLFG GIFNNMGAYD  240
GPPGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-18988180MEF2 CHIMERA
6byy_B3e-18988180MEF2 CHIMERA
6byy_C3e-18988180MEF2 CHIMERA
6byy_D3e-18988180MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.120570.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0391810.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1497250.0BT149725.1 Lotus japonicus clone JCVI-FLLj-13B15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496799.17e-91agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-49AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLB3IX421e-116B3IX42_LOTJA; Transcription factor MADS box
STRINGXP_004496799.13e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-51AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]