PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0381780.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 340aa MW: 37445.8 Da PI: 8.1174

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0381780.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.8e-28	228	279	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCR +GI+RWP+Rkik++ Lj2g3v0381780.1 228 AEKSISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRLNGISRWPSRKIKKV 279 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.972	216	299	IPR003035	RWP-RK domain
Pfam	PF02042	6.2E-25	232	279	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGQVCMSITE VAYYIIDSHT WGFHEACVEH HLQQGQGVAG RAFLSQNMCF CGNITQFCKT 60 DYPLVHYALM FGLTSSFAIC LQSSHTGNDD YVLEFFLPPR ITEFNEQKAL LGSILATMKQ 120 HFQSLKIASG VELEEDGSVE IVETINERVH MRLESVPIIQ SDKSPPRHDG SASPNLRHGV 180 PLDPLEQQTM LDGINDGGSL GDSGGGSMEK ISSLEIKNKT SQRKRGKAEK SISLEVLQRY 240 FSGSLKDAAK SLGVCPTTMK RICRLNGISR WPSRKIKKVN SSLSKLKCVM ESVHGAEGAF 300 GLNSPSSSLP IASAEPCTSK KLDHQAPLRI RPSESRMNWK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0381780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533182.2	0.0	protein NLP6
Refseq	XP_028181204.1	0.0	protein NLP6-like
Swissprot	Q8RWY4	1e-109	NLP6_ARATH; Protein NLP6
TrEMBL	A0A0B2S9T7	0.0	A0A0B2S9T7_GLYSO; Protein NLP7
TrEMBL	K7LDR9	0.0	K7LDR9_SOYBN; Uncharacterized protein
TrEMBL	K7LDS0	0.0	K7LDS0_SOYBN; Uncharacterized protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-110	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]