PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v0286950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24489.9 Da PI: 5.0318 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 14 | 38 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ I+++++ gRt++++k++w++yl Lj2g3v0286950.1 14 RWSQISQHLP-GRTDNEIKNYWHSYL 38 5*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.186 | 1 | 42 | IPR017930 | Myb domain |
CDD | cd00167 | 1.12E-7 | 9 | 38 | No hit | No description |
SuperFamily | SSF46689 | 1.25E-8 | 13 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-7 | 14 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 14 | 39 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MESAERNLIY ILIRWSQISQ HLPGRTDNEI KNYWHSYLKK KVLKPHEMEP HSQTQHASSS 60 SDTKDSSLST QKLSIQDPNY GILENMEKST PQYSDHHLSQ NYNLAKDTSQ SSLPKLLFAE 120 WLSVEHVNAG GSSVNSEDSL VNGFDQTSTF QEPVMNMSGG HFGEEFHDSL IHNSATAMYN 180 SQLNLPGQGD ENDYVHYIQG GDLCSNFTLS IDSIMYV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v0286950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027359123.1 | 5e-88 | transcription factor LAF1-like | ||||
TrEMBL | A0A0S3TBJ9 | 1e-78 | A0A0S3TBJ9_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA16G31280.1 | 6e-76 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 8e-14 | myb domain protein 18 |