PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0286940.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 276aa    MW: 31377.8 Da    PI: 7.3304
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0286940.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++  +G g+W++++ + g+ R +k+c++rw +yl
  Lj2g3v0286940.1 15 KGLWSPEEDNKLRNYILNHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding506.7e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++ E++ +  ++++lG++ W+ I+++++ gRt++++k++w++yl
  Lj2g3v0286940.1  68 RGVFSKHEEDTIMTLHHMLGNK-WSQISQHLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-22965IPR009057Homeodomain-like
PROSITE profilePS5129416.2791062IPR017930Myb domain
SuperFamilySSF466891.1E-2713109IPR009057Homeodomain-like
SMARTSM007173.4E-101464IPR001005SANT/Myb domain
PfamPF002492.4E-131562IPR001005SANT/Myb domain
CDDcd001674.28E-91862No hitNo description
PROSITE profilePS5129424.14763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2466117IPR009057Homeodomain-like
SMARTSM007172.2E-1467115IPR001005SANT/Myb domain
PfamPF002491.2E-1468113IPR001005SANT/Myb domain
CDDcd001671.06E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGVQLQEKTK PKYRKGLWSP EEDNKLRNYI LNHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGV FSKHEEDTIM TLHHMLGNKW SQISQHLPGR TDNEIKNYWH SYLKKKVLKP  120
HEMEPHSQTQ HASSSSDTKD SSLSTQKLSI QDPNYGILEN MEKSTPQYSD HHLSQNYNLA  180
KDTSQSSLPK LLFAEWLSVE HVNAGGSSVN SEDSLVNGFD QTSTFQEPVM NMSGGHFGEE  240
FHDSLIHNSA TAMYNSQLNL PGQGDENDYV HYIQGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22111173108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0286940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359123.11e-149transcription factor LAF1-like
TrEMBLA0A0L9VIR11e-139A0A0L9VIR1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TBJ91e-140A0A0S3TBJ9_PHAAN; Uncharacterized protein
TrEMBLA0A4D6M0Q61e-140A0A4D6M0Q6_VIGUN; Myb proto-oncogene protein
STRINGGLYMA16G31280.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.15e-63myb domain protein 18