PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v5038160.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 260aa MW: 28490.9 Da PI: 8.8113

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v5038160.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	24	82	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ Lj1g3v5038160.1 24 PQEQVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKR 82 7899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	17	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEAGLAPNSC TTRGVLEKKT RPQPQEQVNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR 60 YWTEGGSLRN VPVGGGSRKN KRIITSASPK VIPDLNPPIP NASLNKVQQV GHDLNLAFPA 120 MGNYHHGHGM SSPYVEMGHD TSNYHSSSSC STAPIDLLRS GLVGSRGLNN PYVVMPMSSN 180 SLYPASGTGF PMQEMKPSLG LGFSLDGLEN RSYDEIQQNG GGSGRLLFPF GGDTKQVEVE 240 HSNKEQGNKS TAYWTGINDW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.4059	0.0	pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v5038160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136873	5e-66	BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA.
GenBank	BT144333	5e-66	BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
GenBank	DQ857267	5e-66	DQ857267.1 Glycine max Dof17 mRNA, complete cds.
GenBank	KP662910	5e-66	KP662910.1 Cajanus cajan Dof5 (Dof5) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027335554.1	2e-91	dof zinc finger protein DOF2.5-like
Refseq	XP_027335555.1	2e-91	dof zinc finger protein DOF2.5-like
Swissprot	Q43385	4e-53	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	I3SV35	1e-91	I3SV35_LOTJA; Uncharacterized protein
STRING	XP_004510648.1	1e-88	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	5e-53	Dof family protein