PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4999560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 924aa MW: 104935 Da PI: 6.0045 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.2e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Lj1g3v4999560.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Lj1g3v4999560.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.68E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.2E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 7.55E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.32E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 4.0E-58 | 406 | 656 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 924 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDIRQR RRKRRGIDYN AEIPFEKRPP PGFFDVADED RPVEQPKFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAER QDAPSAILHA NKLNDPETVR KRSKLMLPPP 300 QISDHELDEI AKLGYASDLA SSEELTEGSS ATRALLANYA QTPSQGMTPL RTPQRTPVGK 360 GDAILMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPK KKEILTPNPM LTPSATPGSA 420 SLTPRSGMTP STSRDGFSVG MNPKGNPLRD QLHINEDMDM HESAKLELRR QADMRRSLRS 480 GLSSLPQPKN EYQIVMQPVP EDVDEPEEKI EEDMSDRMAR EKAEEEARQQ ALLRKRSKVL 540 QRGLPRPPAA SLELIRNSLI RADGDKSSFV PPTSIEQADE MIGKELLTLL DHDNAKYPLD 600 ETASKEKKKG AKHVANGPAV PMIEDFQDDE LKDADHLIKD EAQYLRVAMG HESDSLDDFV 660 EAHTTCINDL MYFVTRNSYG LSSVAGNMEK LAALQNEFEN VRSKLEDGKE KMVRLEKKVT 720 VLTQGYEMRA KKSLWPQIEA TFKQMDIAAT EFECFQALQK QEQLATTHRK NKNWAEVQKQ 780 KELEKTLQKR YGDNMAELER IQNIMDQFRL QAQQQEEIEA QNHALESSEA AADKIDVQGT 840 ENHEATPLSV DQQVDIVQDQ VISSSINDMD VDSCKEDKAH NTDIKLPDVP AAADDSGNIR 900 ALQWKLAVFR QMGRIEMWRI QMRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 803 | 3 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KKRELKAAGIDIRQRRRKRR |
2 | 198 | 204 | QRRRKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25917 | 1e-119 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4999560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027350739.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A1S2XUJ0 | 0.0 | A0A1S2XUJ0_CICAR; cell division cycle 5-like protein | ||||
STRING | XP_004494735.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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