PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4979980.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 318aa MW: 34397.5 Da PI: 5.8874

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4979980.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.4	1.2e-16	203	257	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v eL +eN++L k+l +++ + Lj1g3v4979980.1 203 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSELRGENSSLLKRLTDVSQKFS 257 689*****************************************99988777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-20	201	265	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.0E-13	202	256	No hit	No description
PROSITE profile	PS50217	11.634	203	255	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-14	204	255	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.22E-12	205	255	No hit	No description
PROSITE pattern	PS00036	0	208	223	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	7.5E-15	272	315	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MERVFSVEEI TEEYWSSVGK DEPGKMNRST SEWAFQQFLK EASSSVAAEQ PCSSTSPSSS 60 SSSSMVDVKL KNDPSVVVPV PIDSEDYHAI LKTKLNLACA AVAMTRGSLV KSQDLATLPE 120 NGSRASNPSE IVAGATLKES GPSGNDASKL QNKDVNVPIG VPTMQIKPAV AIRSTTSGSS 180 KELSDDDDAE GEINMTGNMN PADAKRVRRM LSNRESARRS RRRKQAHLTE LETQVSELRG 240 ENSSLLKRLT DVSQKFSNAA VDNRVLKADV ETLRAKVKMA EETVKRVTGL NPIFNGMAEI 300 SSMGMSLFDE NPSSHIAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	224	RRSRRRKQ
2	219	224	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.12611	0.0	cell culture

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4979980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027349621.1	1e-141	light-inducible protein CPRF2 isoform X1
Swissprot	Q99090	4e-94	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A371G4H7	1e-133	A0A371G4H7_MUCPR; Light-inducible protein CPRF2 (Fragment)
STRING	GLYMA03G40730.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	8e-66	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]