PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4851630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 206aa MW: 23427 Da PI: 5.6718 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 126.4 | 3.3e-39 | 22 | 201 | 29 | 206 |
GRAS 29 elaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdis 120 + +g+++qR++++f+eAL++r+ r++ ++ k + +e+ e ++ k ++ P+ ++ ++t qa++e v+ge+++H iD+di+ Lj1g3v4851630.1 22 SSSYASGNTVQRVVFHFAEALKERIDRETGRITKGSEKNEEME-LLQKMGGTNKSllCHQKIPFNQVMQFTGVQAMVEHVAGETKIHLIDLDIK 114 4455678********************7777776554444432.23333333333347899********************************* PP GRAS 121 qGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206 G+Q +aL+qaLa+R+ + ++i ++g + k+++e tg+rLa+fAe+l+++f++++++++++++++ ++L+v+++Ea+++ + Lj1g3v4851630.1 115 CGVQCIALMQALAERQnsmVKVKFFKISAIGL--KACKTKIEDTGKRLANFAESLNLTFSYKPVLVTDMAEFKEDHLEVEEDEAVVIYS 201 ****************5444467899******..45**************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.181 | 1 | 206 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-36 | 22 | 201 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEMWNLFSFS LLQLSLQYQW NSSSYASGNT VQRVVFHFAE ALKERIDRET GRITKGSEKN 60 EEMELLQKMG GTNKSLLCHQ KIPFNQVMQF TGVQAMVEHV AGETKIHLID LDIKCGVQCI 120 ALMQALAERQ NSMVKVKFFK ISAIGLKACK TKIEDTGKRL ANFAESLNLT FSYKPVLVTD 180 MAEFKEDHLE VEEDEAVVIY SPDADY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-16 | 27 | 199 | 36 | 205 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4851630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625975.2 | 4e-86 | DELLA protein RGL1 | ||||
TrEMBL | G7KSU2 | 9e-85 | G7KSU2_MEDTR; GRAS family transcription factor | ||||
STRING | AES82193 | 3e-85 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-19 | GRAS family protein |