PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4849490.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 28568.4 Da PI: 4.3147 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 54 | 112 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+ Lj1g3v4849490.2 54 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDSSMLIITYTSTHNHP 112 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-32 | 43 | 114 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.835 | 48 | 114 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-26 | 51 | 114 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-35 | 53 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 55 | 112 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MENNASPQLE SEASLELKLE TQASKKQKMV EKTVVTVKIG ENVSKVKKNE GLPSDFWSWR 60 KYGQKPIKGS PYPRGYYKCS TSKGCSAKKQ VERCRTDSSM LIITYTSTHN HPGPTTNLPQ 120 QQQKESESET TENLPGTLKE EEEQEQVENF PATLKEEEEQ EQIENLPATL KEEEEQEQIE 180 VEEEEVNTNS SSTMTSSDQG ANEEIFHYLQ SPIIDQEEDP FKLEKNNDRI DLLLEAEPLC 240 YAAQVRNLST S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-24 | 44 | 115 | 3 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-24 | 44 | 115 | 3 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4849490.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139285 | 0.0 | BT139285.1 Lotus japonicus clone JCVI-FLLj-13K23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625977.1 | 3e-95 | probable WRKY transcription factor 35 | ||||
TrEMBL | I3SFN8 | 1e-179 | I3SFN8_LOTJA; Uncharacterized protein | ||||
STRING | AES82195 | 1e-94 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 7e-37 | WRKY DNA-binding protein 35 |