PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4830490.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SBP

Protein Properties

Length: 467aa MW: 51187.4 Da PI: 7.577

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4830490.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	134	210	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C adl+ ak+yhrrhkvCevhska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Lj1g3v4830490.1 134 CQVKDCGADLTVAKDYHRRHKVCEVHSKATQALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQ 210 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.8E-33	127	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.59	131	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.49E-37	132	212	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-29	134	207	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MEARFGAESL YDPRVVLGNR SSTMEWDLNS WKWDGDLFIA RKLTPVPEHR QFLPPLPGSS 60 NSNTSSSCSD EADLRIRNEG ERKRRVIQHE EDAAGTLSLK LGGGNLATIS SWEGSNGKKS 120 RVAGGGAASN RALCQVKDCG ADLTVAKDYH RRHKVCEVHS KATQALVGNA MQRFCQQCSR 180 FHLLQEFDEG KRSCRRRLAG HNKRRRKTNQ DAAPNGSSLN DDQTSGYLLI SLLKILSNMQ 240 QSDRSNQTTD QDLLTHLLRS LANQNGEQGG KNLSNLLREQ ENLLKEGSSS GKAGTVSTLF 300 TNGSQGSPSV TRQQQTVSIS EIPHQVMHAQ DARAADQQTM SSTKPSISNS PPAYSEARDS 360 TAGQTKMNNF DLNDIYIDSD DGIEDIERLP VSANLATSSL DYPWMQQDSQ QSSPPQTSGN 420 SDSGSAQSPS SSSGEAQSRT DRIVFKLFGK EPSDFPLVLR SQVHLVF

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MEARFGAESL YDPRVVLGNR SSTMEWDLNS WKWDGDLFIA RKLTPVPEHR QFLPPLPGSS  60
NSNTSSSCSD EADLRIRNEG ERKRRVIQHE EDAAGTLSLK LGGGNLATIS SWEGSNGKKS  120
RVAGGGAASN RALCQVKDCG ADLTVAKDYH RRHKVCEVHS KATQALVGNA MQRFCQQCSR  180
FHLLQEFDEG KRSCRRRLAG HNKRRRKTNQ DAAPNGSSLN DDQTSGYLLI SLLKILSNMQ  240
QSDRSNQTTD QDLLTHLLRS LANQNGEQGG KNLSNLLREQ ENLLKEGSSS GKAGTVSTLF  300
TNGSQGSPSV TRQQQTVSIS EIPHQVMHAQ DARAADQQTM SSTKPSISNS PPAYSEARDS  360
TAGQTKMNNF DLNDIYIDSD DGIEDIERLP VSANLATSSL DYPWMQQDSQ QSSPPQTSGN  420
SDSGSAQSPS SSSGEAQSRT DRIVFKLFGK EPSDFPLVLR SQVHLVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-32	124	207	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4830490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004965	0.0	AP004965.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT20J05, TM0143b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027353529.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_027353532.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9S7P5	1e-115	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A1S2XV77	0.0	A0A1S2XV77_CICAR; squamosa promoter-binding-like protein 1 isoform X2
STRING	XP_004494461.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	3e-95	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]