PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4830200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 367aa MW: 41471.9 Da PI: 7.1684 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 305 | 363 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r+aed +v+++tYeg+Hnh+ Lj1g3v4830200.2 305 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGsGCPVRKQVQRCAEDRTVLITTYEGNHNHP 363 7***************************98****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-34 | 289 | 365 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-28 | 297 | 365 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.769 | 299 | 365 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.1E-36 | 304 | 364 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 306 | 363 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEENRHHQRR EFSFLSSGGD FHRHNLNLDC STNNTDPPTP PPFKEMDFFK IHPHNSNKDA 60 AAAADDDHHQ QQQQQQYDQD QRDTHLTITK HESPSLVTHH PVNTGLNLTC SSSANNGEEN 120 TETELSRVES ELRRVQEENH KLRIVLDQIT KSYNQLQAHL HFIVLHKQNP HHQIIVEQNI 180 EINGMIAGQK YVDPGPCTKL DVKIDASINS DDKSDREASI SPSNNKEVMS NKRDHHHLTT 240 KPADLGKQQA CPGPTGDVLD RSSSQSLGSP KLEESKTAEH VAGDQFHLRK ARVSVRARSE 300 APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMGSGCPVRK QVQRCAEDRT VLITTYEGNH 360 NHPLPPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-22 | 294 | 365 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-22 | 294 | 365 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4830200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004967 | 0.0 | AP004967.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT27L02, TM0144, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163249.1 | 1e-125 | hypothetical protein PHAVU_001G218500g | ||||
TrEMBL | V7D0T0 | 1e-124 | V7D0T0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007163249.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 5e-64 | WRKY family protein |