PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4830200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 362aa    MW: 40889.2 Da    PI: 7.281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4830200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30300358259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +v+++tYeg+Hnh+
  Lj1g3v4830200.1 300 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGsGCPVRKQVQRCAEDRTVLITTYEGNHNHP 358
                      7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-34284360IPR003657WRKY domain
SuperFamilySSF1182905.62E-28292360IPR003657WRKY domain
PROSITE profilePS5081129.769294360IPR003657WRKY domain
SMARTSM007749.1E-36299359IPR003657WRKY domain
PfamPF031061.2E-26301358IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEENRHHQRR EFSFLSSGGD FHRHNLNLDC STNNTDPPTP PPFKEMDFFK IHPHNSNKDA  60
AAAADDDHHQ QQQQQQYDQD QRDTHLTITK HESPSLVTHH PVNTGLNLTC SSSANNGEEN  120
TETELSRVES ELRRVQEENH KLRIVLDQIT KSYNQLQAHL HFIVLHKQNP HHQNIEINGM  180
IAGQKYVDPG PCTKLDVKID ASINSDDKSD REASISPSNN KEVMSNKRDH HHLTTKPADL  240
GKQQACPGPT GDVLDRSSSQ SLGSPKLEES KTAEHVAGDQ FHLRKARVSV RARSEAPMIS  300
DGCQWRKYGQ KMAKGNPCPR AYYRCTMGSG CPVRKQVQRC AEDRTVLITT YEGNHNHPLP  360
PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22289360777Probable WRKY transcription factor 4
2lex_A5e-22289360777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4830200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049670.0AP004967.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT27L02, TM0144, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163249.11e-127hypothetical protein PHAVU_001G218500g
TrEMBLV7D0T01e-126V7D0T0_PHAVU; Uncharacterized protein
STRINGXP_007163249.11e-126(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-64WRKY family protein