PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4830110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 395aa MW: 44054.2 Da PI: 6.9084 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Lj1g3v4830110.1 14 KGLWSPEEDEKLLRHITMYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.2e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ l++++++ lG++ W+ Ia ++ gRt++++k+ w++ Lj1g3v4830110.1 67 RGAFSQEEENLIIELHAVLGNR-WSQIATQLP-GRTDNEIKNLWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.516 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.30E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.199 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.77E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT MYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQEEENLIIE LHAVLGNRWS QIATQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPLS EVENGKEDKN KSQEKVSNEL NLLKSESFKS DAASYEQNSS SIAPKAYTTE 180 MEGSSSSNCS SKDLLLDRFM SQPQNLMGNY YPLQMSFAST DSAPTNSNSC HWFSQIGRPS 240 DVNSEYASNI MSILPPTSSF CYKPSLPVPL EDISTPSFAV NGSNYWEASA SNNSNSSNTS 300 DGIGSRELSS SNILSSSSWG LTDCSSSTEE AKWCEYLQNP MLMLEAAQNQ TPSKHLVPDT 360 LGAMLPHSKQ QEEPSQSSSI FSKDLQKLTA AFENI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5062 | 0.0 | floral bud| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4830110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004967 | 0.0 | AP004967.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT27L02, TM0144, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027349131.1 | 0.0 | transcription factor MYB61-like | ||||
TrEMBL | A0A371FSV6 | 0.0 | A0A371FSV6_MUCPR; Transcription factor MYB61 | ||||
STRING | XP_007163255.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 2e-95 | myb domain protein 55 |